abi/__init__.py,sha256=rdZ4kPq_Eo39DeDj6EoR6doNBjKu83GK_N3Gc2sjf4s,5757
abi/_shared.py,sha256=oNXTsA6DocMMgPl3nDMPciq3nL0BS3oXMQ9rQUVj6l4,16483
abi/cli.py,sha256=u2FgqyAt04dFW9UB7vxsZpE7HkVEdOlEXbm0c9mpttA,91895
abi/config.py,sha256=Q29HCEfFyDGiU1RLdozY-1G3CQ62LvNxXpWnY03KOmA,7342
abi/config_models.py,sha256=vl4veWpmhJwadYyx2npMe0DVFD0XEcKrp3QkDGy64ag,3066
abi/dag.py,sha256=t2yQiUvDTCbPXjsKOgMK-XBxdAmW8_zZMLqEUvsrYgU,15801
abi/dag_planner.py,sha256=xhmoR98QxZUOcbL-LFtNOz6OycjLZZNT2QRdmN6ngJs,67487
abi/diagnostics.py,sha256=Dlzg-CNkKSBCOTyIzNH9elIELJTII2jOdR9jgYTXd4M,19835
abi/doctor.py,sha256=QIWsUDhF6erXUkQ0-2gIHCsPuI-xAX1vS_t36BKAJhE,5336
abi/errors.py,sha256=3z-E3VQKp1RHUOL4BKpXvsd93ZjptF7u0poYH2QF3IA,6639
abi/executor.py,sha256=QmI2rk-V7-GzLxGTp1kte3LHHw2GazoH1fFGxRdOwXg,79189
abi/filesystem.py,sha256=4FUodldQ--VD6hvq6TC6pcqoFi97RlEb45boetTm_fc,824
abi/interfaces.py,sha256=fdVECCN5IWVxZqONG_YZXaOjAGWFk9iltb2G6q5vszg,15832
abi/internal.py,sha256=1r9TfZK5kRNfQCx5ieKJPTtHndsq9JuKHtiMdrRebww,6250
abi/json_utils.py,sha256=RXqJ21vdmnkERSyX-QsqlLWcSfeHh0pPeLwz3SeC0K4,1633
abi/openai_contracts.py,sha256=tKBJmUFRfoENmHb9pMlk1e1gVStPO9VGFNp5WDp69kU,826
abi/permissions.py,sha256=11be3AsLkBoNM725KHsUXdOr-zZtPEXIjpWmceAwqTU,8071
abi/provenance.py,sha256=ChKBso75hvb2oQ5WG9ESZWz9SyL9RILZRrWSKWNGYqU,39541
abi/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
abi/resource_downloader.py,sha256=DmbihW2XUw-rEfyaLOczVkLUN95fUDkILDs9183yZ5E,16657
abi/resources.py,sha256=yvzKrtjc1uAK2SrKoqGwUjR_eyRlxpfTCjimToKyaaY,33602
abi/results.py,sha256=MWmOx0xMUEIBqO9odwDFyCUIShOmu7aImxnD9lMnQxM,14091
abi/runtime_lock.py,sha256=0_ivzLugnVdyA80I90d7WbbV0z8xMKwUW1z8R_ktOwE,22539
abi/schemas.py,sha256=-4hnroLMlCE4BQr8BchAtZ7P5v5D220tY_aVA2ltFvo,25660
abi/skill_installer.py,sha256=eX_V436iDLqBWSapGffV1n0Dtg6W0K5Z--36goHtFZM,2747
abi/step_runner.py,sha256=4EUt_gjFccMvV4ZMHqwL_M6M_4oAJhKlEwzulHXAH8A,8200
abi/tables.py,sha256=LH042ttIbY8m02h4Seb7xzGVLgXnqnW0oxLPBbDIq28,10655
abi/testing.py,sha256=3pLX5R60VQeyoT94-AESQN8sK_SIba5f-c9Mwlq0t9I,1957
abi/timeouts.py,sha256=9e189dDk1qcDtklyD2u96ttQgFRE4nOBj6BIBLrbLdI,1405
abi/tool_descriptors.py,sha256=a1eW7AKeRdrGrbXcW54gTJSXgC6yQw8wo2n8QdMcH3w,32091
abi/tools.py,sha256=1KEtAWWW9hwbE0R47o-8U_V02yuH2nfj8Obqbi2xU18,86236
abi/tsv_mapping.py,sha256=TXgQOrncWl-y1P0ovdLllkd5OodGeA7__qQ2CXF4ayc,18606
abi/agent/__init__.py,sha256=cP-LG432PGvS7tykHoQ2knJjN0SxBnNZGDLlSLr6qXc,115
abi/agent/context.py,sha256=a3_qa5aWtxq9EOLuFnRL4Z5ZYcGnolkKHj8AC3y8Frw,8390
abi/agent/envelopes.py,sha256=H9duq3m5ChTNFhR2p8asSYM42AxLVwVx7zG_VopFSTY,7768
abi/agent/interface.py,sha256=5VqBlPM9FXSBOSQn0jZZpv73JsSW40STgjsW_PwVbd8,65531
abi/autoplasm/__init__.py,sha256=Dy3LT7EhwOVkrjJIS7YGrEghOOs9gvKguQKXoxQh4D8,147
abi/autoplasm/cli.py,sha256=gWWu2fMyQozjXJ1k_LJ_xIgsPV8741wpHIISJzEDkoI,571
abi/autoplasm/config.py,sha256=jiKjgB-1BZ9X4PvLEL__c9ovSS4N3GpYL_butw9CXT0,580
abi/autoplasm/dashboard.py,sha256=iKJDszROuJDXSWQeZ3ULdfd-3cdsqDhvPNtDgWOws2U,589
abi/autoplasm/filesystem.py,sha256=IrARXNEQjT_1WuUM9GyjNMh27xjzsqzgl_5zpaDQGsw,592
abi/autoplasm/json_utils.py,sha256=PuZ1M1y1U6CJZop49pwP-EywdoEMpXxjZ62uYvo63pc,592
abi/autoplasm/logger.py,sha256=UQNZVg9hh8eC6lijpsprQXiyktIFMSJjtbSk7iJpr_4,580
abi/autoplasm/parsers.py,sha256=6FyWr-Ga-zhAxb36EwjW99GCrUbc3ctMpx2UiHHsEdA,583
abi/autoplasm/pipeline.py,sha256=xL70Ug8t_odazZPUfI1p5YJU9jFksEmZlg_1AvW_uTk,586
abi/autoplasm/planner.py,sha256=IVjTYtzg9tI_bzRY2F8qvHRscuZbExt1lmucOFhZRvI,477
abi/autoplasm/progress.py,sha256=zpeVngghyG7LVe1jZjA5NOzfA5g_fJ52MdJJV0MA7NI,586
abi/autoplasm/resources.py,sha256=dEVkFj6J-agt8K05YODH5NkPf6RGH8W_F6ENPNe-etM,589
abi/autoplasm/result_validation.py,sha256=YCvosygBA5i-FBDVaciX1Vl5DlEGmh236bGX9TczBxg,540
abi/autoplasm/sample_sheet.py,sha256=YUWfQeFJBjFiNXYbHRbSWHgUGA54F8hciSxPX7ymU5Y,598
abi/autoplasm/schemas.py,sha256=PSga4Fk0Wy7OZxgG2d198MkdpmPejNeZghcm-py8K_0,583
abi/autoplasm/selectors.py,sha256=q9x6kruIPeA6xKZ7DHEYx0HwNN3vBttdNm75oVkwlrs,589
abi/autoplasm/standard_tables.py,sha256=gd18Iwy-iFwXEqdsGT0frJO_5JQ3j4HcL9gVqOEEqX4,536
abi/autoplasm/statistics.py,sha256=x8uA9MhYQdK1VXshYkArrmAra5eIqY8zcBmW3pL-gyw,592
abi/autoplasm/timeouts.py,sha256=1V5NLhT3EgoPBd528ZwAQffXTt-nJzgrpVpMiamYssQ,586
abi/autoplasm/normalize/__init__.py,sha256=2rjXDmVpSNIM4zBuPOKjdxA1JcaZfp76FxwBOCowfL8,35
abi/autoplasm/normalize/abundance.py,sha256=1-v1RrGIUKSa6LDEwoBXW-fuJoF8Rd29eZiYTVot1ik,594
abi/autoplasm/normalize/annotation.py,sha256=Tnf2c8txv3ChF831AIvN3PbMuyEud7upaxjSa62vlbk,515
abi/autoplasm/normalize/plasmid_prediction.py,sha256=zOELdCV6gZxapsp0cuHjRLens-ZOeXZ_KE3tb_Y0T3c,531
abi/autoplasm/report/__init__.py,sha256=2rjXDmVpSNIM4zBuPOKjdxA1JcaZfp76FxwBOCowfL8,35
abi/autoplasm/report/html.py,sha256=gIYg3JBICQ23xGXT-niFcOK2jSdVgyVKVqsu50LAfAU,564
abi/autoplasm/report/markdown.py,sha256=4Gm21Vfu4_DR36CCOMpyo_NCHlxpXy_iCIbW1l472_M,505
abi/autoplasm/skills/__init__.py,sha256=2rjXDmVpSNIM4zBuPOKjdxA1JcaZfp76FxwBOCowfL8,35
abi/autoplasm/skills/abundance.py,sha256=h0FEnm_i4lsbAldRDIVvXi-7LOggCGo-ftPysE-98Tc,507
abi/autoplasm/skills/annotation.py,sha256=KxmNQymi5Q8qaWrrADDSlXlvzuTPv2TGvBz45_vOk1E,509
abi/autoplasm/skills/assembly.py,sha256=sY_PQ70fGJM1Xv5WD0yYv8NOQkTA3g8fv_Efpvr7MsI,505
abi/autoplasm/skills/base.py,sha256=1Yq-Yoz4tNMROj5lPpHFnGPaPDmdlLV2-3vyoQgdua0,564
abi/autoplasm/skills/host_prediction.py,sha256=p5sbzbGiDZM8bjWRV5oXEs7-uVMVSpCv35bJusWMJfs,519
abi/autoplasm/skills/plasmid_binning.py,sha256=EyhByDD5OsqyWgfYs_pXhtD2VZAzHOoPlnHCxAot_8c,519
abi/autoplasm/skills/plasmid_detection.py,sha256=I_M-ZJACLIdhcTbBqbaoPLK6CDCQ5xnDKo-xaAYkMqI,523
abi/autoplasm/skills/qc.py,sha256=27jaUdPibeAuUUCwV5ZbdPoLUfRc0m9PgDIcbV6wfss,558
abi/autoplasm/skills/registry.py,sha256=_ldp3HmAkF3WJ3coghKhm49rTMwSJAzPd7GRYM-eTnc,505
abi/autoplasm/skills/statistics.py,sha256=X-7zd0KdVzXSOyoxzMW4hwokSez3lIY4z7qCktWDXuI,509
abi/autoplasm/skills/typing.py,sha256=TmC9T4B70fZZaM6Iq3CusiycCLp9kmJf9UD3euVv1Qo,501
abi/autoplasm/skills/visualization.py,sha256=luMu-fs9_UE2KoR8IGa770AJ31E2tQjngRfL9Zmsilk,515
abi/contracts/__init__.py,sha256=fBSmuZyNQpX-kdeI6pzy3Y7MZTK0TTcrsPgkTQFSiC0,19946
abi/contracts/lint.py,sha256=2HhgTJyfDFbU60BJduDRN4oW_kHHz3OXxk3qQ_6fsTM,26557
abi/contracts/lint_template.py,sha256=HzAT_ZmnjYUIFIOqiD4jBh1Wg3AeZp7C7Q6jD4Csmd0,10139
abi/contracts/step_contract.py,sha256=VZXfMc5gygcdUN50T5nkOYVNeNCfEJI_jMVTu-PPRZY,36412
abi/exporters/__init__.py,sha256=vYX7nI6qSNOlhbmpuS-mD3og9-exdhBvTcRTWVJgc1c,111
abi/exporters/nextflow.py,sha256=bY_CuPRiPNcR23Nkexhz4BS0ByJ4vrD1PUQLqhGnK_E,16092
abi/figures/__init__.py,sha256=Q6y8bVRIF9kYJSNX0ET2CCTwxSnxEEFVzUP09u3TlYQ,834
abi/figures/base.py,sha256=ohptHanXK-XhIS7Y2dwRCilPq7ldrYTsq7a_3cxSZrY,21012
abi/jobs/__init__.py,sha256=QfepUh9nmw6edwuNdCWxBNtnEnWBBMScgLwM8kU2WgE,323
abi/jobs/client.py,sha256=K97DZFMdVnZZdBCh2u8PV1t8o-e4igS7mthukno6aJQ,3811
abi/jobs/service.py,sha256=i7ZbA2AKyxQ98rfJLs1cmzjyHqjBoChH8sHnAzk37yU,62362
abi/mcp/__init__.py,sha256=2EpD6Wuysyi9GmTdz9Nh1K8FhkTyR8xmV1MKNP6LFyI,50
abi/mcp/_tool_factory.py,sha256=aUItJ8iQaKfNJBKaKvUH-UsHjupZ9IyblXPscLTN1sM,6394
abi/mcp/server.py,sha256=F989maf-wT3QeoYbhbcoNMWqO-71zqy9mBLxfyCjEYI,3272
abi/plugins/__init__.py,sha256=L2RHVvnOXIMF3zpL9mgbnmeaL0Cm4IPbaIMFEt37qwA,2827
abi/plugins/amplicon_16s.py,sha256=tHZoUBnnKaqEUkhJ2vM6rqDoswxps5MH03CyNTM02No,27395
abi/plugins/metatranscriptomics.py,sha256=tMcTyuxr5zhzHHQUVm-TIzacJVzOrzKJt8JvTkis88U,17698
abi/plugins/rnaseq_expression.py,sha256=YP5u-DZ_zOKRknSqe41VIFGLLeGVwM9YOpQ77n7jM20,16104
abi/plugins/validator.py,sha256=MO3P9D7AlG3V-uG3HnZNpEQEF9L6Geo4cJjw4NEZloU,1374
abi/plugins/wgs_bacteria.py,sha256=yd05hug7zHC6eqZq8fB7p_f76prCEpAF5hlhjf2ockA,13703
abi/plugins/easymetagenome/__init__.py,sha256=1EzB0Ff6pCy3fff1RYCZXFJrLZ3GZ3GO6JSKhif7tbA,17456
abi/plugins/easymetagenome/adapters.py,sha256=2j8e3I2Rwx5ZHV2W07ot2chQHpLQOLY3gjd5dVf-bKE,19014
abi/plugins/easymetagenome/handlers.py,sha256=QzkvDYRQHcbYT0pCM8YJmW5ftjQ7Z8qqvI-FklUKWG4,11595
abi/plugins/easymetagenome/workflow.py,sha256=NhKPL2tAvlUH4xKmq-3A4JdVj4kg456CE9mz5EAic5g,17071
abi/plugins/metagenomic_plasmid/__init__.py,sha256=RBu2k902RfBvyLgTqwNMf7tJ2X5cp3AQuqCh8Y9qVow,33527
abi/plugins/metagenomic_plasmid/_engine/__init__.py,sha256=Dy3LT7EhwOVkrjJIS7YGrEghOOs9gvKguQKXoxQh4D8,147
abi/plugins/metagenomic_plasmid/_engine/cli.py,sha256=nPcXckI00jF-Wn9OgTSCZjlMzPq2zaT55dT4EjARuxQ,45888
abi/plugins/metagenomic_plasmid/_engine/config.py,sha256=4ofK8hDNzq7mznlS8YDqwstDiZDww5tbfhYfvp4AONQ,12346
abi/plugins/metagenomic_plasmid/_engine/context_resolver.py,sha256=V04NnEcdF6h-lNrjQPIRryasSjngUO7nxenyfc0aUac,14706
abi/plugins/metagenomic_plasmid/_engine/dashboard.py,sha256=k-KipMpW-SPfO4TOISXNyd5NquFmttIOoxLqj6m5pF0,17253
abi/plugins/metagenomic_plasmid/_engine/filesystem.py,sha256=pEThMKlzP6nRndK-MbWD3dZVSMy1YtCalFNaAjXN8kA,609
abi/plugins/metagenomic_plasmid/_engine/json_utils.py,sha256=GMrwWQuORwapeXzuVtnzlpmkxDagPcWGUmdLp_40fqA,1565
abi/plugins/metagenomic_plasmid/_engine/logger.py,sha256=u5Zfn-Hg9YiTUXW322EXRbrdl7YyTAPFBDONSuViWWI,3715
abi/plugins/metagenomic_plasmid/_engine/parsers.py,sha256=VSNvACmGMWEFYGvzrRe63VHcytK2-Tj3XzKEeCqJC_Q,67647
abi/plugins/metagenomic_plasmid/_engine/pipeline.py,sha256=BBJ0TI9rP3ZRp4xOTn2lE03cnu-KfY5WudKP4St1mSw,41733
abi/plugins/metagenomic_plasmid/_engine/pipeline_dag.py,sha256=m4GSvef7KUV5muu1jrdlhNMR-0RwWNY98d9Fjqa3Bv0,13174
abi/plugins/metagenomic_plasmid/_engine/progress.py,sha256=HMoJ_o0gBgDO1HkOKMihp2T-W5wQQqpBTnxufpb_ZtQ,13016
abi/plugins/metagenomic_plasmid/_engine/resources.py,sha256=V3NB2YlP-XjbX0K9d6Yxwcf9lOhVI8oV5DRJqN5JqjU,67773
abi/plugins/metagenomic_plasmid/_engine/result_validation.py,sha256=ttrgrzY__cW1r-XKmU1zYHuYYRDxbtEoYi4CJcdBf_g,4300
abi/plugins/metagenomic_plasmid/_engine/sample_sheet.py,sha256=bWyLh--ML7lCYEwUCrWYd4yrxqgJbHB60W9LN0KvkpM,8077
abi/plugins/metagenomic_plasmid/_engine/schemas.py,sha256=4EOpY8KS0T4R-8GfRVR6usV66qAvZHvHpwsF5C4eOWk,691
abi/plugins/metagenomic_plasmid/_engine/selectors.py,sha256=0o-msx_5YW3H24GIu_EDXOrwt1atpOV0uAHEJHiY20U,846
abi/plugins/metagenomic_plasmid/_engine/standard_tables.py,sha256=uICNCbWAnKlgxlRfLFqKAdrPurowF653C4-KrbKYbqE,24433
abi/plugins/metagenomic_plasmid/_engine/statistics.py,sha256=Z29u1FiMQ33Ubgu3LVanLCgD3qvcW5tjSGXIJFsFb2A,14660
abi/plugins/metagenomic_plasmid/_engine/timeouts.py,sha256=AgoRp9r3-JHFeXfN5XTTmQt-scZH1cRt2-4vKk24WnQ,1425
abi/plugins/metagenomic_plasmid/_engine/normalize/__init__.py,sha256=Cy_5xVE892eakEbSAfTPNuYiG9Yc5Oz_AnYCFMsHtaE,36
abi/plugins/metagenomic_plasmid/_engine/normalize/abundance.py,sha256=ZeWinsWJ8_ba8wwb06VbEG0sDOul_BcAaImlJTDGhoI,891
abi/plugins/metagenomic_plasmid/_engine/normalize/annotation.py,sha256=dnCocRUJzClBhNgZy0hk3-udOCKL_HIV_N6dsBsNQS0,863
abi/plugins/metagenomic_plasmid/_engine/normalize/plasmid_prediction.py,sha256=M4KnPfagpVHvXltvn_ff3eMD-kb5A-9zUTsbx0Wg-M4,2922
abi/plugins/metagenomic_plasmid/_engine/report/__init__.py,sha256=yv46q1xYNiaFqZISjnN8g4hST1bBGqX_PRd7sgAU0Eg,33
abi/plugins/metagenomic_plasmid/_engine/report/html.py,sha256=4q40qzL9w33LIrgRuFWa8-jtx0J4Mb39-jZXpq7TqGg,12960
abi/plugins/metagenomic_plasmid/_engine/report/markdown.py,sha256=zGEY1tQADJBja52wfzJb1a78U8YHCWriDDzGN57C0v0,13347
abi/plugins/metagenomic_plasmid/_engine/skills/__init__.py,sha256=3DUU6Kn5ppW32hxsImm4E89vUY0ej0-TlSueqRkUlHI,37
abi/plugins/metagenomic_plasmid/_engine/skills/abundance.py,sha256=YHyHUWzQ_986m3BkOa_blW2PUKNVBdpTUi7KdRRH0qc,256
abi/plugins/metagenomic_plasmid/_engine/skills/annotation.py,sha256=sK6_bvQsD5IdfsZdgDcuAyHPDZx8k1d7zykP6SuF87g,257
abi/plugins/metagenomic_plasmid/_engine/skills/assembly.py,sha256=MZNLuCrWPFRElwuMa9GW_oa9gdSjpr_CemJ6TKt6tgE,260
abi/plugins/metagenomic_plasmid/_engine/skills/base.py,sha256=3OCPxXfH_s9NDOCWsVemCs7gjVmC0h7OzDFKkXGEGgI,13891
abi/plugins/metagenomic_plasmid/_engine/skills/host_prediction.py,sha256=sMklvg2IaYvr7Q_f888acKLMbkX32jHZd5s3d1cLhtg,262
abi/plugins/metagenomic_plasmid/_engine/skills/plasmid_binning.py,sha256=SUF3ZapKumdTvw-A5nKncEgdJCprINpkf2a3f5kge_Y,262
abi/plugins/metagenomic_plasmid/_engine/skills/plasmid_detection.py,sha256=nLh4t-BN5ES91K1PBLe-oYk3yABEH03xdP0_S5Qo07o,264
abi/plugins/metagenomic_plasmid/_engine/skills/qc.py,sha256=JWjOLlCGl-TR4CoNkmL9AjHGQzkuw7EQSD5jKbvBXvA,254
abi/plugins/metagenomic_plasmid/_engine/skills/registry.py,sha256=A1y4n-N8VIlCCD862MM_9r6NxV-faLjys2XqLD693g4,8357
abi/plugins/metagenomic_plasmid/_engine/skills/statistics.py,sha256=9PcfykBtHigFIb0YmvlLP1NNYOjA-iV28mxpycBC4D4,257
abi/plugins/metagenomic_plasmid/_engine/skills/typing.py,sha256=RxliZj0vx2oan6PHx5UNRbckb8KctJUUZ9Y5nA-1kzE,261
abi/plugins/metagenomic_plasmid/_engine/skills/visualization.py,sha256=LtTvApXGtS3o7u9N7l-LA7UNgK1mkI3xwUTd00MD_cw,260
abi/plugins/viral_viwrap/__init__.py,sha256=dGTZX2MQvWTtUTi4D5Dh6RQxy3ceek9QmLthJLqFd34,8559
abi/plugins/viral_viwrap/artifact_mapper.py,sha256=IIIbRstpM6c9PkNwR-_e8SsVjABG1l1YOqg-qZhsO80,2468
abi/plugins/viral_viwrap/checker.py,sha256=8WIq8QR5TI5y767ABIi1WZa5EzWf49PMNqz1Le1sliY,7671
abi/plugins/viral_viwrap/command_builder.py,sha256=yx2K8EWl93XpEbIP257p6OYPWcNSbc-HPIu3OWU7eME,3295
abi/plugins/viral_viwrap/errors.py,sha256=p_D_H70dUKg-iPeDpNxezAEQLJ6IIYU4EDIBp1DyyQM,806
abi/plugins/viral_viwrap/handlers.py,sha256=D_KUFuPRbM7ba6QjpqsOraxy7r1wYUHmVeJC7pYKlKM,4798
abi/plugins/viral_viwrap/parser.py,sha256=wzR4WV6vN5cXv9tB4P0XOHKyK7h-fV9ne0XMTo7Kq60,6202
abi/plugins/viral_viwrap/runner.py,sha256=ydk_UddFs7OruQzk1r0XcYXxxCV5psnTzRzop_oyhig,3239
abi/report/__init__.py,sha256=hCgkjcVRcpHnEjIOzEWYcncvo_pOj2ef0Vs-vlgVYqY,1941
abi/report/citations.py,sha256=KcqUDqzK_OW3b0cLcdvTefRdAGl5Z-Sgu4yN9MYrIrc,5309
abi/report/generic_report.py,sha256=TDr7Xl-lkEOlB0bCahAJyE4PPODxADo4E3HWHpzDi3E,18599
abi/report/html.py,sha256=t7IQrd11EGGakx6GgpP5bjNPenB9MSG1sX8pR0_Isno,9601
abi/report/limitations.py,sha256=jzoqwxzTixL5fkaQjnpJ7xyyT_68szLYvjb_Mwpt7JM,3178
abi/report/methods.py,sha256=YnUvzfk-7DIWjXausfU5B1GTKIvKhb6pgfImS3nIX5k,6576
abi/runtimes/__init__.py,sha256=NNy-EgrIPcpnlprV3fd_VFFZUPm8V0Zc51Dgw7ZNi-w,432
abi/runtimes/base.py,sha256=sM4Fj7JG9pGiohN96JC6ZWQNsCuMovHYZsSSZLpfgjE,1802
abi/runtimes/hpc.py,sha256=M6xc2-HMVML3ZaxLC-LKEA7qGT471oq5x8iWd-g2gKM,26016
abi/runtimes/local.py,sha256=SnmcfV_R4PHULai-uYqME_y8RVtwaVXLKSbcAuyCBGU,3316
abi/runtimes/nextflow.py,sha256=7eTD3_DxErv2NkM2SKq-6CAtu7wXEHOei0NcUNIvJfE,13988
abi/sciplot/__init__.py,sha256=jDsfStl2LTLhgUaqc1-fl8V8lPxAvYAdJd46M2XLtoI,1316
abi/sciplot/adapters.py,sha256=I2H91MDf5GBkBuV4dhTL39EDO2ASLFhJlG-D7Kinc4o,7117
abi/sciplot/api.py,sha256=pKGoH9tFT43qge2x-7LDx0Zj0YAlYSQ6usdxRFBrSNM,3800
abi/sciplot/cli.py,sha256=_sibUAbeRYXp26cVlOkqQ8sxvsl1Ye8qujX2kgx6zCI,4395
abi/sciplot/lint/__init__.py,sha256=LH3EZ8vpE2Ow7QNVZ68R86knouml1RH15q8rm6eUxa4,11412
abi/sciplot/palettes/colorblind_safe.yaml,sha256=Zx-BaJZgzqiSmfr9jNu9SpUPB2DSPzk1pfmQPZRgK_4,613
abi/sciplot/provenance/__init__.py,sha256=mEWHdOcPz0atnhVtqIqat-T2nY_3ovBSwTPsZWPXOgE,3359
abi/sciplot/renderers/__init__.py,sha256=n5DzkxPIEeHyus3_4AevnYJXK7MQm0ngBj6pwGNZcOk,1923
abi/sciplot/renderers/matplotlib_renderer.py,sha256=njmNxPN2CU1ZyBBUgBmSu9_9cABnkb-rpx3viUiPhVU,7460
abi/sciplot/renderers/plots/__init__.py,sha256=Tct163amjcmMhxzd8o_wQXKiBjfz0V2Cz8ivyXIgeGg,3038
abi/sciplot/renderers/plots/alpha_stats_boxplot.py,sha256=DBpdySMtlMShNmp8skYasO5YiajMqZfYq5CXXBrNl98,4153
abi/sciplot/renderers/plots/barplot.py,sha256=sphjiE9Dk9ghovQFKCqAj5Cggfv_ooB1nxSeWo9jwvY,1870
abi/sciplot/renderers/plots/boxplot_with_points.py,sha256=t1MF5Si7ommh40lRTWXzt43vp-KgQ1ElTO6IzH32VEs,2854
abi/sciplot/renderers/plots/differential_volcano.py,sha256=D44kwXKZCS8xfB8YW4FEpRAz-_N3N48jNOZDRURFBQ0,4447
abi/sciplot/renderers/plots/genus_heatmap.py,sha256=4wKX-2k7Nfd9PuGfnUOUV9NczSq7nzjIpXLnFICgWnk,3432
abi/sciplot/renderers/plots/heatmap.py,sha256=0R5LYCplufEab6gWvd3yaqnCyrWV9qtgo1Nz2Tx8ZjE,2733
abi/sciplot/renderers/plots/lineplot.py,sha256=hp3q2PqRXfZQjq2r2AT_SW6PeitJYNUDVxdLfnJ22sA,2403
abi/sciplot/renderers/plots/ordination_plot.py,sha256=x1w3IuXfRUfrcpS_PIAkqr5w7HRzOvXQVc0Bgy7v5GQ,3345
abi/sciplot/renderers/plots/pcoa_plot.py,sha256=nuaZZG4GSzv_BdnRayPkb_VKRfLCxsttdX6T5yJfD1M,5541
abi/sciplot/renderers/plots/phylogenetic_heatmap.py,sha256=xVkt_vf9WeeSv-LWdQOsCYpGPr61ayQUb7tCrQty3WI,5119
abi/sciplot/renderers/plots/phylum_stacked_bar.py,sha256=wmImpZWoMtk0NxRna87M1g9OC1ET2VdAJp_qvNBHWnE,3958
abi/sciplot/renderers/plots/scatterplot.py,sha256=ouH-ukHneyHhqOsxiFgl7MensXbXed1MC7o0fftOgtQ,2721
abi/sciplot/renderers/plots/stacked_barplot.py,sha256=0jZ2gDg2-iApSCR5bufvem7S7mS4FDSRH62VWtS0TPs,3247
abi/sciplot/renderers/plots/violin_with_box.py,sha256=AkHANzYpqP2mwszmHKgbXyUbmrtIm_jpfx1MDi1A2hw,3116
abi/sciplot/renderers/plots/volcano_plot.py,sha256=SVTGpjCDVba94-ZUMnVpMVV3t32YB6Fp3XkWCDe6F5A,3721
abi/sciplot/schema/__init__.py,sha256=JIzM17GXLvKgzDhIWtNo3GQjqjx4FmXYqzd4IfArwlw,1367
abi/sciplot/schema/figure_spec.py,sha256=NSXe_w3sgNAXt5PsIfsS2GhZHsHtAznpZkRzpHIQ128,10273
abi/sciplot/schema/palette_spec.py,sha256=Gld8lmRupLT6MQNgDbavdZ_cO-fTPL0KfZ24zweVYDg,9741
abi/sciplot/schema/theme_spec.py,sha256=oCPApfIuM20LMCVRLyfWeUGvji7IIwhvm5kDm2L1Sy8,5566
abi/sciplot/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
abi/sciplot/tests/conftest.py,sha256=P0eN-5dlj09PMZFxHdSpT_bhymR2_n02buom_mhh4AI,3079
abi/sciplot/tests/test_biological_renderers.py,sha256=Yg4UTcLjmlxeqSyRvXsd7LQcOewD-qIj7cjwNjOelGE,5410
abi/sciplot/tests/test_heatmap.py,sha256=BTTPdecNPjjhlG1PMjyHhsZARj6Q3T7BwPNXNtGeMto,6188
abi/sciplot/tests/test_lineplot.py,sha256=vNVZIlAhbFrvrut2TP6Ujoqu3YOFAhimFQNNY2NpYUc,7299
abi/sciplot/tests/test_lint.py,sha256=aPVoOAZ46gkz55zzPpiNjNAPSGyz2fYUxR6FCMM_L_E,3823
abi/sciplot/tests/test_matplotlib_renderer_unit.py,sha256=CfntwkJIqVRgetl_8Xu7XJC0U0zfsNdj94aOSShEp8U,9576
abi/sciplot/tests/test_pcoa.py,sha256=-AfbyvrXJDkJzbI_Zc1KxUYAZcRhYIMubxksNla0UOc,7632
abi/sciplot/tests/test_render.py,sha256=HN-6t7vM0PrRMnWeeqHByI6jqOje959CU4XyEGM9kYA,16097
abi/sciplot/tests/test_renderer_contract.py,sha256=sxH93I2Nce8nr0SssgQ5q7oHa0gmIDlyuxngTOtjatM,11977
abi/sciplot/tests/test_renderer_error_paths.py,sha256=4TIdUdWlRr8mKIlDPnag5RStujOwyZsi4vmz9nWy3tM,15003
abi/sciplot/tests/test_schema.py,sha256=J7FLLNuTy3uvTKUmvZ5dEayd8vigzfzBa3iShLXythc,12215
abi/sciplot/tests/test_smoke_all_renderers.py,sha256=UhrvmUU1SRnyz-qB5B1rmStQGuc5SgQQlYR0JbJsB5I,5349
abi/sciplot/tests/test_stacked_bar.py,sha256=G9JSmNxanknDO9jObGxTUqKZqJGU-e2xR48gQkKvPws,7104
abi/sciplot/tests/test_volcano.py,sha256=KU4k22AQWgX_w6E4FxM14ReHX73pDNt5PYcQu5D09Uk,8425
abi/sciplot/themes/abi_cell.yaml,sha256=bLGeaMXXPY0zlQhOa-UfEqm8tnQnNzlLUXE9T46a_qo,621
abi/sciplot/themes/abi_nature.yaml,sha256=5ICPp2CLfSnkFQL4E0uas9izoQ_D7NokYWVVHYaU3yo,622
abi/sciplot/themes/abi_report.yaml,sha256=YIgseI3f6vBlPpPqTsrmQ8CDEVmSg6Ihgn1ZtLjIQO0,612
abi/sciplot/validators/__init__.py,sha256=pfzyuhDVTruDjGoCmUc0VY_Lht2oOo4PNPY1fLT3CCk,5794
abi/skills/README.md,sha256=jWt5X07-hvJM_6RzQCf-rVZ-Hw4hxM-bcYGHyo43IXQ,11986
abi/skills/abi_agent/SKILL.md,sha256=wdkI05qpvNT61u42wdthgbgEW2oss3a20biEG8tL9Nw,9664
abi/skills/abricate/SKILL.md,sha256=UUB5cKOyiti-eWMs4-QMmWkCuSOMRPVi-hJYK7rZPHE,2406
abi/skills/amrfinderplus/SKILL.md,sha256=fNZZkXZ5JB_9meFj7OEIxHbaeRqVj9Saif7L1Mv2GJo,2192
abi/skills/autoplasm_agent/SKILL.md,sha256=oeMGyvtbeTwUI2Y-4tYRZKdXDT5XhDyCPFOeYuI5a9w,12898
abi/skills/bakta/SKILL.md,sha256=FCF0HbypbDi3KcAkDj4kO8VCOCcMVJZ0h77bKoI20KI,2325
abi/skills/blast/SKILL.md,sha256=jCoyEKWhuIvqGdFxBuajN60XEPpt2izC4ly21b-wQwI,2286
abi/skills/bowtie2/SKILL.md,sha256=xBljNAGWJt8M8qpHE_46qiZOhvAcB8HHYhfnnIfBY98,2456
abi/skills/clinker/SKILL.md,sha256=5l0JFsN6edvHRAPXNMYqxqk-pGURZsA4Ii408Y2O85E,2231
abi/skills/copla/SKILL.md,sha256=hTpsdpwgA814r-SUMzEvePGz70So89VvubjQXoOEiSc,2304
abi/skills/coverm/SKILL.md,sha256=0EFeNo3zY0SVusrdikVilf3w1gOMaBSVlLv1f3fpHxA,2233
abi/skills/fastp/SKILL.md,sha256=0b3vPJsBkjXuWkLeX0ypVPndt73GevgFOPdWf-ZW6ps,2963
abi/skills/fastqc/SKILL.md,sha256=H8wc_HWWKdWAJBD599nEjK8ttuJ0E5LZ0BC2EmcwmH4,2146
abi/skills/fastspar/SKILL.md,sha256=Qc34HVZKKanOHNsoDop43I07WvRhxprszHhaFRz5DDw,2341
abi/skills/filtlong/SKILL.md,sha256=59VRDqtxxq2TDTGyoEDyjw9jYdhnQhMsJMiSmlhNgSs,2174
abi/skills/genomad/SKILL.md,sha256=LAGKXi2tatuBSn69vTaYnQCTFp4vKWylYJEJCPBa220,2401
abi/skills/gplas2/SKILL.md,sha256=YbRMV7azxfgVgGRyvRwAefkv3NZZhVaanaGF-Ch_7Ys,2346
abi/skills/hifiadapterfilt/SKILL.md,sha256=GuISnx0As0S38WCueQ9dA1nCFYX5z4nnZK3sOzbpVYQ,2348
abi/skills/hifiasm_meta/SKILL.md,sha256=Ie-kSIaLZSyuzK9eHbgWutZ_Wi6HlBzPovXwbASCoH0,2584
abi/skills/integronfinder/SKILL.md,sha256=Xm18omrS9T8chcRYfZ5eBqNE0djSoU2NYNaI0-jD8pk,2380
abi/skills/isescan/SKILL.md,sha256=a9VhYtmiUXEWwj588cq8hHmZk8-CvJ9PPF1W_LSNpAI,2161
abi/skills/kraken2/SKILL.md,sha256=SWhjbBazgBh4sn_-YNZ-CpwGJgRUVEsfn-KwXqqKVXU,2408
abi/skills/megahit/SKILL.md,sha256=0X_Dy2sZOWiXFYlvc5isua0gf41pDgy2intxuCO7RHk,2469
abi/skills/metaflye/SKILL.md,sha256=0tb6sHAsyMX2Fih3bjNSjhcKUzHgGx2SzmlR8oVmCiM,2412
abi/skills/metaphlan/SKILL.md,sha256=Ty_upAWN4Mg5oNzxfMAtp-wc0tbMNUzB400u3mUkrq4,2807
abi/skills/metaspades/SKILL.md,sha256=qW1Nf8H7DRInHjUdWiIjtVfLcqCzCzLdRyOpKP5RSMU,2299
abi/skills/minimap2/SKILL.md,sha256=Q7Y4IHGmAs2rBXfnDvf44qR80ZjjEAgkDWt1bfkY_3A,2357
abi/skills/mmseqs2/SKILL.md,sha256=ORP25LzmTGZUnAVh4WrRyREwVGpD5SuUhKHYoSsP5TQ,2266
abi/skills/mob_suite/SKILL.md,sha256=hy_IaEjspflaXH2HZsokOLQv_STBIDQvymfJ4kZR_Os,3036
abi/skills/multiqc/SKILL.md,sha256=okU8n-8M9IAs1H-Lx1zDLIoMNJJ72w7kDTeaErU--bE,1929
abi/skills/mummer/SKILL.md,sha256=l5z20pXuhfJLlqyZcfdughEW88iw4lX9wIPXczIK2z8,2352
abi/skills/nanoplot/SKILL.md,sha256=6AXwEOL_0FE78W00O9S1Uu0TK24-n8fOn_C_6OxZAy0,2146
abi/skills/opera_ms/SKILL.md,sha256=T9EzQ_hmam3Y5YHNXbdGTLVIP2I1D9N3_Dbz0j8-Fbw,2583
abi/skills/plasmaag/SKILL.md,sha256=-YhDkdV5THo-JetyYOVNPlA9MyTzS3oO9e4mVKXWBvM,2610
abi/skills/plasme/SKILL.md,sha256=Ea1oBc5PiFBCyuuTY95t2wOtZ_KEB22o5fSNZadYjHE,2355
abi/skills/plasmidfinder/SKILL.md,sha256=D3mbKYkGYoCd0UxjutgIKZZui-6Y7vs3r6kUdtMVDe4,2381
abi/skills/plasmidhostfinder/SKILL.md,sha256=YoXKVd9HPi_3n-_FyLVA44Hhec1xrMQ2st-i_5qXhTM,2367
abi/skills/plasx/SKILL.md,sha256=oUKrUdvwgx2MRyiiHqWoAP4-BR5iyKh3XVO8T6wds4Q,2360
abi/skills/quast/SKILL.md,sha256=6J-eO5apikWpsY-xlZeynE63TM3J3tAk8ddOqvJztZA,2142
abi/skills/report_markdown/SKILL.md,sha256=zW-QWqrD57NsWJ3rQ7uBf24YCUcCD82ZdzFEfDWp-Q4,2146
abi/skills/samtools/SKILL.md,sha256=nstn1C6aOqLwVtHyrOrI7updOSRtPWCKPVGIeNZOfow,2125
abi/testing/__init__.py,sha256=MWVv0KXDDZ31A7yp3iUIhodd2YxR42NyNAtmlfQ1nNY,4051
abi/testing/benchmark.py,sha256=Te3htey2TlMehSpi4VLdQsaU8xY3WYF-FePfhUU1y_8,12726
abi/workflow/__init__.py,sha256=XFlacNO2rlxxoWIJPrXZt7rBs3eHzl76X_oOY7LNSwE,1129
abi/workflow/figure_specs.py,sha256=DSMO5doZYsrIZmbpUuJG_mnSRe5c6cOhHl9D6TbDQIk,2761
abi/workflow/manifest.py,sha256=2xIT1OnPT0mDamjGRtMYvxaeZyhhnUHjW2vcjk7Iz2Y,8542
abi/workflow/validation.py,sha256=RCHlx8ZDobcXp_xmC17VUJHShz9bha-pekDqEUpuV6s,6090
config/default.yaml,sha256=3hRRWeLwxAT67D7O4r-fgYacEAlX8M8j8CrxSuq0jwU,4295
config/schema.yaml,sha256=j9GWsceZt50lqATK5fLxSHtAk74Gh7C7oXGogIVPXsA,1705
config/database_profiles/full.yaml,sha256=kzBy6yLLXSCyMg9Zxy59p7nWiM4OmtNmKYs19sEzEz8,940
config/database_profiles/light.yaml,sha256=L-T0i8Rtm2LStthTSpC6GQgBm6ylgeNdWrpPUflVRIM,1130
config/database_profiles/shared.yaml,sha256=I5sC6gRyi8FObJXiNlR6q_Gg6bkRrpPvYN-1hojmtr8,595
config/profiles/dry_run.yaml,sha256=CgNh5wZazf08jBJ1yw0f0DOOyEy8YBTgBgwyLrQsQ20,59
config/profiles/hpc_slurm.yaml,sha256=N-Azc0FZSBEkK2hHzm7wkwrvGT1fhsZfA2GLzHGL6tA,124
config/profiles/local.yaml,sha256=JwS1I6hfXQrwt3TwW7-pR0eXsQ3ISvC7P38Z-h6u1-U,44
config/resource_profiles/dev_small.yaml,sha256=oc2lrSSLszHN2wDk9V-C6RPiLb17VYJs65nBDGWTfuA,170
config/resource_profiles/hpc_large.yaml,sha256=7t3x7JdGJQEg7xz3YzuYXuvNkzptPsQBJkadNrJEO70,235
config/resource_profiles/hpc_standard.yaml,sha256=Sv6hU5f43VOu5eFb32G7bjLu_u-1qDVMoRF3tpVrHY0,189
envs/abi-qc.yml,sha256=1oqW8psKjFtcqOlvgzdDJupBA_VR66s6t_SrHy2cDtk,132
envs/abi-stats.yml,sha256=s0o2qnvvpzYfLpHjEBbOiY3KH_vxLblPhCPZU5men9c,148
envs/amplicon.yml,sha256=iI9rhUi1r6TQ7IzMXby60x5zqNWmEIC7qieNsdvQFcA,248
envs/autoplasm-abundance.yml,sha256=9nHl0crXvvOSdRVwZR-VPhtxE1Y28tbj2HojVd8PTxw,176
envs/autoplasm-annotation.yml,sha256=1ksA0jrGA1GaiuDNO-NoszUOz_QcNZdr_QIG676v1Ws,326
envs/autoplasm-assembly.yml,sha256=78Tep1xD4XgEGW2z9etmzjiqBidbDPXCge2L6BOf-ZI,195
envs/autoplasm-base.yml,sha256=Q1X6lC-z4VtqHFC8Sg8Y7dNPp_JCVLybn5WXXCLa6dk,379
envs/autoplasm-integronfinder.yml,sha256=_Zx18dgkOnIeg32Fatr-bm2Rk4Dw8IX58hyWN3ocB_o,168
envs/autoplasm-nextflow.yml,sha256=BVwiXtyzQ8yXxuqJ7wVG_f6CVPG1HdY2FLSIcQ1gHOc,110
envs/autoplasm-plasmid-binning.yml,sha256=xUUpUxHrs5t-IUfP8CO5x17V6hzlR2eukaXEedNufAQ,162
envs/autoplasm-plasmid-detect.yml,sha256=M8cBzSQawId8S-WOTeqGGur9oGIj5HI17i_uccq6mQk,166
envs/autoplasm-qc.yml,sha256=VE21YsPhd0Ue-AFfMc1vCnyX1DHtuuHUUA93VWF6rZI,210
envs/autoplasm-visualization.yml,sha256=mQlO-M976WxCXDSM3JThSZN9oIbjAZHGM1GBz75tM_A,259
envs/easymeta-humann.yml,sha256=I1RPbChji3VL68z3yXI5OLRXFFDg6lb36RYLiBSfKYU,148
envs/easymeta-p0.yml,sha256=rx4QwRxdXRjeMQHIhhjanTJtg5c5_wtIFQCyRqbEiFc,166
envs/rnaseq.yml,sha256=2t3tSNnvGpmqbzHhF5RsuwUEi0-0AY7doAiZYXsLu2Q,299
envs/stats.yml,sha256=uHeSnQWh_PU7g-uACXaNRJXpYGhFdiOa8Y20gTJq3no,256
envs/wgs.yml,sha256=Bo3g6-cjIZWbhipq74-jYAmMRp6-22Ry_NsNNvu9fjs,205
examples/config_assembly_full_run.yaml,sha256=quPlXvYN1Olq-Th754R0blRS6Ro1Toko3lWQzBCtHgU,1513
examples/config_full.yaml,sha256=PV9wFsIiZUcehoSAfZPROZTlplmk-6WnN_L2pr0rj6E,887
examples/config_hifi_smoke.yaml,sha256=UJTdGXmI8Tf5FL-6itCl4eL5jXnThqN2VEZSUZ0I8wI,1085
examples/config_hybrid_smoke.yaml,sha256=7xt3_j_vzjNqs1FZXlMdrFJYdE_4F24xiLq76D-rkm8,1185
examples/config_illumina_smoke.yaml,sha256=XTOryqgkMHoDUTYQCeMp3_mggB7BAgLeQ1DT486POaM,1142
examples/config_minimal.yaml,sha256=vmG-6R6xF0nGNv0EMUdFZhFMrwC82YBo2goo--yA0ZA,247
examples/config_ont_smoke.yaml,sha256=r6WRGbL8d7YzY-4LtR5ujHcic6wPTQr2wzZYXiU81yA,1099
examples/sample_sheet.tsv,sha256=LeRbfcWMyl-ut4vtQVudl_3ywYsTHrBFMyoiabuGEHE,311
examples/sample_sheet_hifi.tsv,sha256=bJ01bfWYC_gtpaW5iMpOr63lJeahcSz1euEQhN66V9c,203
examples/sample_sheet_hybrid.tsv,sha256=MEkQJSJ5BmT7bKWKqgnJFFTjBsA58YIZaL1lezRiHjU,255
examples/sample_sheet_illumina.tsv,sha256=TV0Ctl2xWDcVvkir6x0yjrxu0nfFY3fUoYkwjiexWO4,219
examples/sample_sheet_ont.tsv,sha256=RRJm9YJx1V0A0VgaLzHZVUwAY-PSHJl6CGFsib8SntQ,178
examples/sample_sheet_transcriptomics.tsv,sha256=V6x0S4D9Q8WVdgAsCTO8QNeLu-dsJdZkw0pkqdQ1gV0,109
examples/fixtures/tiny_R1.fastq,sha256=LgW6r9V7wlrtj4wxA4o1ysqqpB4vBFFRLSw2q8qPEgQ,37
examples/fixtures/tiny_R2.fastq,sha256=A5_ubkQDDYzIfJgpslPHI6yT7CIqG5keeVE75YlGmDM,37
examples/fixtures/tiny_contigs.fasta,sha256=CiTwKLN2GuNReJB7f_44GXduywRt7lfp_CLeGs8bXSw,82
examples/fixtures/tiny_long.fastq,sha256=XQH0cVVO4_b3kg1ZJi82EklI1QCLYX0N8Ymaj7QR8JM,63
examples/metagenomic_plasmid/config_core_demo.yaml,sha256=_E7F_hWzwBqKWP_FYBRDPujn-ovk8VNfsU4v8R4wrfw,1105
examples/metatranscriptomics/config_demo.yaml,sha256=KowSrlbMpl8brDrv5P47F8_-vGkGcgLMXrXbmodMAB8,391
golden_traces/amplicon_16s.jsonl,sha256=gZjQJzfBp8nc8OPWN-V0LOt5EBAH-thkU52rCcpF1t8,1180
golden_traces/metagenomic_plasmid.jsonl,sha256=k47mVHQ6D1qc8dX0eNLh75VEW9npfJ581_HbNrH8Sdg,1409
golden_traces/metatranscriptomics.jsonl,sha256=lUK7G4SVTS9GUKhGVZ9_8xGMst95ItHXbb44w-c0QUI,1208
golden_traces/rnaseq_expression.jsonl,sha256=LVtzfq_B2UX1SkhkPfA9LusmWhN_XBGxeSGh9xe_6AM,1198
golden_traces/wgs_bacteria.jsonl,sha256=DqS7FbuQauzcWXPMelGGd80iuSOsN-UYemH4legqCnE,1150
plugins/amplicon_16s/abi-plugin.yaml,sha256=2WpVB17Umcg14ezr_K6oin5IMEdoUnrgkoiD3yj1QCY,3538
plugins/amplicon_16s/citation_registry.yaml,sha256=0Ce-Ymxs7Ivp6Md5dD9YDNifsScZicTo7ECSmE9-sbY,1126
plugins/amplicon_16s/config_default.yaml,sha256=mbNrGo-e3EVU_G47tg1tsn-Ga0Iw5mW3wY0FXxCUvMM,385
plugins/amplicon_16s/figure_specs.yaml,sha256=14bgFfa6TX9vgRe63wA9xwN66nGiwTTieBT_4ada4_Y,3276
plugins/amplicon_16s/limitations.yaml,sha256=ZTpPg74S-XB7G5lJu6UsQaLgfDjY-8kiY9KCdBKhcZs,1126
plugins/amplicon_16s/parsers.yaml,sha256=g2Yw3rdXe3KFdcyN6zovJhNFcC79XB2GnvhnQDCYO0w,304
plugins/amplicon_16s/pipeline_dag.yaml,sha256=wXH_SPlWYtS16_urqb0S_xUHNcH-Xge6u6edvhA0Opw,9491
plugins/amplicon_16s/sample_sheet_template.tsv,sha256=ikjSnCTLd4CYUJ4LHksrLugTCEL_mXxhkQ4yWLBGj-A,379
plugins/amplicon_16s/standard_tables.yaml,sha256=AJTXS-YPq6ejpMGLxj58l6UaLxz0CxwjuOPM2MN3ViE,1121
plugins/amplicon_16s/tool_registry.yaml,sha256=_tnHXSLUqBYYgJynH1BMlybOktv-aSmG2HP30Q5pj2o,3147
plugins/amplicon_16s/tool_contracts/cutadapt.yaml,sha256=ue-2JBEHIwJ2xtO5uFfVku5HmNQpep_IJuScom8YtHk,1300
plugins/amplicon_16s/tool_contracts/diversity_metrics.yaml,sha256=OehyIbdvkHyuY6b3h3fg2H31tkeEhCoXvwLxEECQdUY,1519
plugins/amplicon_16s/tool_contracts/phylogeny_combine.yaml,sha256=bTofDh_WUuCnKlf0Pfdy-Pce4RrWjghOT5nbpEBjq-c,681
plugins/amplicon_16s/tool_contracts/phylogeny_mafft.yaml,sha256=H23LiqKoFOTVG_wE4SNlVfCyYaoZ2XDXAwTvrReihHE,812
plugins/amplicon_16s/tool_contracts/phylogeny_tree.yaml,sha256=F1iuL2PdkElSF0nAuUem_oMXktH9OT6ekyQjEIP7Ce0,734
plugins/amplicon_16s/tool_contracts/vsearch_denoise.yaml,sha256=dQUlPLdTpi2wk6Gf8DssjiIaNPLt20loGGj06digWwU,950
plugins/amplicon_16s/tool_contracts/vsearch_derep.yaml,sha256=g9q2zlp8sDaEEJArLqws5wEBrzSjTb_FDSTbzqeB5ac,903
plugins/amplicon_16s/tool_contracts/vsearch_mergepairs.yaml,sha256=UZay1QdSJdnxbo4_e6i3h5NyehNUyolaRgTUJRX7PeQ,1144
plugins/amplicon_16s/tool_contracts/vsearch_otu.yaml,sha256=e02FIBbPG1ZsekjSGE0lmre73rpNG-2cD7eHGumTvuQ,983
plugins/amplicon_16s/tool_contracts/vsearch_taxonomy.yaml,sha256=MOQNp2LEePmJDzWiXqOORF6TOtjRrqN3DEzoARyKcGI,1018
plugins/easymetagenome/README.md,sha256=M8-O2t4v3Kr86sEuU7qe_-99du766jD7BNhdRj9KQUg,856
plugins/easymetagenome/abi-plugin.yaml,sha256=IFLeRuFcnAPgw0dYeaTeSdIYPKcGURXafVM8hHbD-y8,1546
plugins/easymetagenome/config_default.yaml,sha256=L5vTfQaiXRAfs91-xvM3osaQcdRLLsxHGV22eA-2958,604
plugins/easymetagenome/pipeline_dag.yaml,sha256=SLkchV8_VJWYfpwDG0m2qTjewBmRCIr9UC3286ggA5o,17254
plugins/easymetagenome/sample_sheet_template.tsv,sha256=aZe9737SJTw5nzqzn3MqpohJbbASsXYA2Q0ZJbVHY50,71
plugins/easymetagenome/standard_tables.yaml,sha256=3MwGNhWNWzMxqC3uJdxPCiWnJTZ3X-GzWEE9C2qCB7A,524
plugins/easymetagenome/tool_registry.yaml,sha256=0rswNlUncasZPwzibpOgj6XmVk_YzS-UUv21qqK7q74,3729
plugins/easymetagenome/db_registry/kraken2.yaml,sha256=kBadrj7JsrJd5VaXW_TZmjMtmQGUtbenLfHJTm_8WZw,433
plugins/easymetagenome/examples/p0_config.yaml,sha256=5fo2JwXQwJ9MtEDEE2hLdDTA_Ae7MA3M_xsSOlgy1hc,288
plugins/easymetagenome/schemas/report_manifest.schema.json,sha256=fJ3_CKxMuTkjasCnQX4H8mjmE_mL1L6qpiUD2hA4Wf4,435
plugins/easymetagenome/schemas/sample_manifest.schema.json,sha256=NJQmxkbSmYrl_oxBb7P13z1GzKCQ4LbKsKcUwimbgRE,428
plugins/easymetagenome/schemas/taxonomy_table.schema.json,sha256=2ZZPzD720dng90pDdFQESL5BpG_OTtrrETRWi8pKsyg,295
plugins/easymetagenome/tool_contracts/bracken.yaml,sha256=gur3-VMEALYv1jjtuyw305ZE-MDgjHMGYBrvKhf6kag,891
plugins/easymetagenome/tool_contracts/fastp.yaml,sha256=vrdCfaqOP42Xetz84qThwUrNtHmButXO0MgknRpT3cI,905
plugins/easymetagenome/tool_contracts/humann4.yaml,sha256=PhxI72VMPJ8ni5tutJmUC_t0zFwEPKI9wxX6TbxEe0k,1208
plugins/easymetagenome/tool_contracts/humann_join_tables.yaml,sha256=hRugFrj8IYnYEWPzBoHRU76g_xZTSCyJqnWpuPT8Gp4,667
plugins/easymetagenome/tool_contracts/humann_regroup_table.yaml,sha256=xZfHDSbgX6neVeEWGGiqTQ9JNe6UaZBpcy4httr4xLk,676
plugins/easymetagenome/tool_contracts/humann_renorm_table.yaml,sha256=llFT85AVgKnrBRLHov1nuQ4RC_0_X5JqBDTN_dEqnec,677
plugins/easymetagenome/tool_contracts/humann_split_stratified_table.yaml,sha256=HXoe0fKfP3k23k_vuW5fJNxwSq2i9vxMcyx4V4hicfE,674
plugins/easymetagenome/tool_contracts/kneaddata.yaml,sha256=TLj1q6I01CYlOEiSfE93I0lybN_mRKuz11sXnffBTik,1021
plugins/easymetagenome/tool_contracts/kraken2.yaml,sha256=lmlGfkLSmNvtm1ujVSpKcmGc9rnxxxw-0ANBlmcXmK0,993
plugins/easymetagenome/tool_contracts/seqkit.yaml,sha256=yoEwUZceJfgC-P4ZqGLx8kY4dDvESzyCue5p5yIIVMg,681
plugins/easymetagenome/tools/bracken.yaml,sha256=nFJNf7LQRdJji3bKeAB_ZjqEVjetrztoVu9ubGfsmp4,154
plugins/easymetagenome/tools/fastp.yaml,sha256=g2_UD0uB_X6z5BJwNmcgc0o46jsDgiGTtL_5wQtaIOU,150
plugins/easymetagenome/tools/humann4.yaml,sha256=JPg6e_YEXLn5ufvFW-UO0WdGQo-rKbZu9arvhE1j5Fg,153
plugins/easymetagenome/tools/humann_join_tables.yaml,sha256=xE5z8gcbegvLdIMFyZJnSMxmUlGBEb-NRPsSXrydEZQ,173
plugins/easymetagenome/tools/humann_regroup_table.yaml,sha256=Gzy7hXnHmRi1kKd6PjvQ5mTnaBwvVvQeIU57iXo1pjo,177
plugins/easymetagenome/tools/humann_renorm_table.yaml,sha256=bC9uIEsEhbkg93qQaJ-GDD8d1Q84DP2uxedPKQNo4Ms,175
plugins/easymetagenome/tools/humann_split_stratified_table.yaml,sha256=eq-b8_pMwhhu7H1CEraTKJNswcxkCsm43hiqdP-JpmY,195
plugins/easymetagenome/tools/kneaddata.yaml,sha256=4jGzm92PqX59pQ9rM0BN0t5yKGneqWOPQzHvir5JIic,158
plugins/easymetagenome/tools/kraken2.yaml,sha256=xWpVmvTRf4E7nlzWhZO2aQxyHDSg47frUyKwIiDkMcI,154
plugins/easymetagenome/tools/seqkit.yaml,sha256=P5bDbYTqOainc3sfUPpaDnsAGPt3GLd9WWuhUl473lQ,150
plugins/easymetagenome/workflows/catalog.yaml,sha256=gZCm8LjQ70TfAGFK2g_T-UQQyufxKwLUbu8zTxNtIJw,714
plugins/easymetagenome/workflows/preprocessing_kraken2_bracken.yaml,sha256=t0F83IXZT1b7aXAW3Ei84_bDYq8aNPq3NdnKVH_e0xQ,7835
plugins/metagenomic_plasmid/README.md,sha256=B4Fdn-3Pv3s4CiX4kTGIc9QuamW3rqi6cOjLxEroVD8,1058
plugins/metagenomic_plasmid/abi-plugin.yaml,sha256=Ur_vcdxXitpSaPXua9ZAh4H9ZxLIWN1fXWhYPYV7TVU,3529
plugins/metagenomic_plasmid/citation_registry.yaml,sha256=YbxTq6WpuHTbTH5fNod9snR91fdOKWX5M3avp2WDyg0,2523
plugins/metagenomic_plasmid/config_default.yaml,sha256=3uDSjvr6y8BLPUVieSvjRV8pgj2L-055Th5SvKoXrEg,3554
plugins/metagenomic_plasmid/figure_specs.yaml,sha256=kq0oo6y3tYFfWB-AiZF_7cRadtgV8ARH2A7leqdFceI,5319
plugins/metagenomic_plasmid/limitations.yaml,sha256=VnsmqxCXVX5GzklW-0EQsqy72ZypLEq96Cg__orJATQ,1667
plugins/metagenomic_plasmid/pipeline_dag.yaml,sha256=dIOMGbGEMALBtoNddBXDvDWnmc0cYHAl5Xhyt0IjbN0,77693
plugins/metagenomic_plasmid/sample_sheet_template.tsv,sha256=WP1ylEbhxQ9pZXxlVRZY1wMfrORj1u0EHSR8MRt4LQ0,465
plugins/metagenomic_plasmid/standard_tables.yaml,sha256=hjVs0beBSCfWbAtmLI5-a41y5lqkpblQ3rQdcAGMcVU,4796
plugins/metagenomic_plasmid/tool_registry.yaml,sha256=72DAt41cMh2xr9cXOxu_Cx7yIOk1TjVcGSPMr0wWC7U,20816
plugins/metagenomic_plasmid/scripts/deseq2_plasmid.R,sha256=62BBxs1W1h6iNXDtlqwKxqsWcq36SRScJ23Bo3scf5Y,3547
plugins/metagenomic_plasmid/tool_contracts/abricate.yaml,sha256=e6XtFqNgGnmOU46PJkzLx60hYLz_l7XifgWKq8_Rdn0,1096
plugins/metagenomic_plasmid/tool_contracts/amrfinderplus.yaml,sha256=VLuSnNWKotwPAab1exsk0rLWTMRMBGzZHFBRKiXIsOI,992
plugins/metagenomic_plasmid/tool_contracts/bakta.yaml,sha256=0HIQ_rUgrcucGBJ_eBhNe4KBcFWS6fvicddJvm9cqxY,945
plugins/metagenomic_plasmid/tool_contracts/blast.yaml,sha256=PM-KiQLiAJjHJ5YmQop8z6TwEEUC4SijAlFm0H6HKdA,1094
plugins/metagenomic_plasmid/tool_contracts/bowtie2.yaml,sha256=UBFBNeccsl-eIDk2wMZG5ORbBuJPVIR_RsbMk2oJxys,1193
plugins/metagenomic_plasmid/tool_contracts/bowtie2_host_removal.yaml,sha256=4fevwuJftETlinLokVg1Ttty_SoRIHkDtdKRHU8JF6M,1110
plugins/metagenomic_plasmid/tool_contracts/checkm2.yaml,sha256=1ydr3hi_7g74Gku66CIGaed2ci2mmj7Atpw4Dl43UiE,793
plugins/metagenomic_plasmid/tool_contracts/clinker.yaml,sha256=sOeBvJJGNr4yRDVYSUJd3Mhq3WU3gfNr41Hkhl3FCAw,936
plugins/metagenomic_plasmid/tool_contracts/concoct.yaml,sha256=b4m6v55uY_gfl_5Y7Kjk171fi0O3e4j99HbkTIXypBQ,920
plugins/metagenomic_plasmid/tool_contracts/conjscan.yaml,sha256=BN4cxDDH_xQE62OATM474XzntUEfJ-UDC8_lbgHPkVU,927
plugins/metagenomic_plasmid/tool_contracts/copla.yaml,sha256=aegLvO4vHCGAYLvDUfAX5EfU6PJMv3rWuRj4SB3bvkw,987
plugins/metagenomic_plasmid/tool_contracts/coverm.yaml,sha256=d1d1YMTevDanp08OVPYHvLkqZ2Iwda_AIOOfTbXfiTA,926
plugins/metagenomic_plasmid/tool_contracts/das_tool.yaml,sha256=fZgUsShviFLIFymKoeEYh_THVFy8aOiU-p2CZq-l64M,992
plugins/metagenomic_plasmid/tool_contracts/deseq2_plasmid.yaml,sha256=zqXgHz05Uw4RSn-ls_wtjilxfoGN4CTxIzDl632D_wY,1143
plugins/metagenomic_plasmid/tool_contracts/dna_features_viewer.yaml,sha256=FTx_Sc8kpjwHMDU37OXRK0GDW25IhhnUzeuA-x53i-U,1093
plugins/metagenomic_plasmid/tool_contracts/dorado.yaml,sha256=IxebsDf7J5onx_2Yk0mR7_rYpy3hx2_2WVnAa_zVo0E,743
plugins/metagenomic_plasmid/tool_contracts/eggnog_mapper.yaml,sha256=h-22mhE7ZyJYP9-fEJy5E6_1GBrtGXnRlGiknL3jZ1g,1040
plugins/metagenomic_plasmid/tool_contracts/fastp.yaml,sha256=etDqydsn2sy-JGNJaYgZFh_gDZsFWGQOfGwH2RZ77zk,1305
plugins/metagenomic_plasmid/tool_contracts/fastqc.yaml,sha256=owpoLucSr4oamfZSmmj1l6I9eKmpQG0mnzlohfLGTpI,914
plugins/metagenomic_plasmid/tool_contracts/fastspar.yaml,sha256=rylZxJHPWrz84Vbg8CKx8KUBMjkvplA-J_Rsqbom7nY,1058
plugins/metagenomic_plasmid/tool_contracts/filtlong.yaml,sha256=0qMJf7cU6HQrSBR5eO8k7mjqvgTAr0CtMp2fgFT8iEo,934
plugins/metagenomic_plasmid/tool_contracts/genomad.yaml,sha256=WED2svpTrBbidrkBsrWtlchT6pPZV7-uIxhMrq7AqOA,1023
plugins/metagenomic_plasmid/tool_contracts/gplas2.yaml,sha256=VCN3lCbIYYdGKwr_kOKPsL3qUOShdII7sP54bFZ2ti8,1005
plugins/metagenomic_plasmid/tool_contracts/gtdbtk.yaml,sha256=dsqNzY9WcfJzIySr4_5p7iddYCCbqr4rE7m21r7EF1Q,890
plugins/metagenomic_plasmid/tool_contracts/hifiadapterfilt.yaml,sha256=KUAXk5uo33vS7q1Ow8A_UaRKueRNK_vJVx4-ykbaL1c,1187
plugins/metagenomic_plasmid/tool_contracts/hifiasm_meta.yaml,sha256=y3dGPbo6zmktsQ2lndsCD4LmrJbjY81N4P_JwyzASxU,1133
plugins/metagenomic_plasmid/tool_contracts/hybridspades.yaml,sha256=4hJi5Qc7ToP5xA1c9klGqyCx2MX_H6KHJM9pEciSVjk,975
plugins/metagenomic_plasmid/tool_contracts/integronfinder.yaml,sha256=7jOPKDhQXNgZ98mTelsqKOTl24w8fyr_BirfLqI0LnA,854
plugins/metagenomic_plasmid/tool_contracts/isescan.yaml,sha256=wVQ8ZiiVpQyFlAhPWanwcAUejFsbn6jyvKGEzD-gzNg,812
plugins/metagenomic_plasmid/tool_contracts/kraken2.yaml,sha256=g3cZ3UCPDWEzNdI5yc3l0C-h-7gN-Zx0ZgDfvIh5Tc4,1099
plugins/metagenomic_plasmid/tool_contracts/macsyfinder.yaml,sha256=D797JNIGXd4kB1JBK5RqnN6TfAPQEf3_0VjIVqDyFYE,898
plugins/metagenomic_plasmid/tool_contracts/medaka.yaml,sha256=7vDaOgua2SfUXRpCpRzIbrBskK2Rl54GQ-vk4hLADlI,874
plugins/metagenomic_plasmid/tool_contracts/megahit.yaml,sha256=g2KyvbqliWD0fwRlsFCp_iuvlTEfI-P1ieFq4_XzS58,967
plugins/metagenomic_plasmid/tool_contracts/metabat2.yaml,sha256=jO0CG68muSRwiIIZrE2KUi00IQBJK1TMML1mcImPvcQ,942
plugins/metagenomic_plasmid/tool_contracts/metaflye.yaml,sha256=cYPx3SpkeNCm2dmDJbBCqn5uO5G8QW_WIgNtOsh0yo4,934
plugins/metagenomic_plasmid/tool_contracts/metaphlan.yaml,sha256=OZ7iD1UMqOIoui2uZYpFKisneNTW_Q1gp8E8H-L16mM,1093
plugins/metagenomic_plasmid/tool_contracts/metaspades.yaml,sha256=wxEjr-6eeYL3j4iGbkvSbJ2_dsiGrah8s0YzVB1JxiE,885
plugins/metagenomic_plasmid/tool_contracts/minced.yaml,sha256=2Y4m2Q_2F0iz8Ktluq28uu6LAGJ6vnBUpuhUl1nma9M,945
plugins/metagenomic_plasmid/tool_contracts/minimap2.yaml,sha256=JlrppoAYhz_HkiDSJbHDA2faPPNtIm5e5_Aptg8eF48,966
plugins/metagenomic_plasmid/tool_contracts/minimap2_host_removal.yaml,sha256=yM2K_GYqizTtvLndfeIDvDZ5gmLeHT-MKtKBEDG-36Y,964
plugins/metagenomic_plasmid/tool_contracts/mmseqs2.yaml,sha256=kwOz2dXb7YCx9jvrWPB8e2x0RjG4dJYod6rwZOgyUgQ,1026
plugins/metagenomic_plasmid/tool_contracts/mob_suite.yaml,sha256=9JeZE6T5oqMPtlcRbFY_Qr-Pb9iGdioWatuEKJmA5CU,1080
plugins/metagenomic_plasmid/tool_contracts/mob_typer.yaml,sha256=-Go9XLR_WzB0ufOYGPgRYazcaXR2WrCw535ropFa2_I,994
plugins/metagenomic_plasmid/tool_contracts/multiqc.yaml,sha256=rTbgwdMcw2k0q58zUmcneGih1eT4u2LMWwetekmGsOY,873
plugins/metagenomic_plasmid/tool_contracts/mummer.yaml,sha256=Pu2lCD4XHCaSwBIUnJ4f3UQRgCJEKdDROteoSVW6bRo,1032
plugins/metagenomic_plasmid/tool_contracts/nanoplot.yaml,sha256=urtTgmCsLjoumvOeeqEiueNGWvqd-YLnLzJ0jUBjSio,909
plugins/metagenomic_plasmid/tool_contracts/opera_ms.yaml,sha256=Ci_4pk0VUq7bbfE9x3Uyy59tkzi6D_101WYxkViw0Ss,1253
plugins/metagenomic_plasmid/tool_contracts/plasmaag.yaml,sha256=E7vEeeOvmCu-x4VdPgJzOTmPFQ2l5Xjjd0IdWk38bas,998
plugins/metagenomic_plasmid/tool_contracts/plasme.yaml,sha256=5WL7ajjeF9lc2EEuN1Q4kzXh_zUCa-CRqjQNOvn0WO0,1056
plugins/metagenomic_plasmid/tool_contracts/plasmidfinder.yaml,sha256=-x1YWy4GmipwGahgdOQBZdmVGWFGrorZPO5832inMNw,974
plugins/metagenomic_plasmid/tool_contracts/plasmidhostfinder.yaml,sha256=5hD7b3yZz8I0Cq8Vd5uhbOERIH-Ye3PuNWNGL_sI4c4,1129
plugins/metagenomic_plasmid/tool_contracts/plasx.yaml,sha256=y696I7JgsaSOYpLVYCNGb1g37PMXmHNs2dbIS0jjjiA,1072
plugins/metagenomic_plasmid/tool_contracts/platon.yaml,sha256=FAXg5A6VF5e4NU-2o1uVxtl-r4HbdQQEuBVM2wdd-u0,1065
plugins/metagenomic_plasmid/tool_contracts/prodigal.yaml,sha256=il3Th5tponMpt2aVs7lQkORjjRUTM2g6P6B3fBrcc6Q,1085
plugins/metagenomic_plasmid/tool_contracts/pycirclize.yaml,sha256=CSlV0FYZEe0jafMz1j9tMZMPfyuSIsbTfHCWX9g-jgw,1221
plugins/metagenomic_plasmid/tool_contracts/pyvis.yaml,sha256=eFHWmOV3yX6Gf1KLg0oElU7YsaZOu2GSWu9LGuJM8FU,1046
plugins/metagenomic_plasmid/tool_contracts/quast.yaml,sha256=yhRp7hk2hAWfk_S_-Z3AvMs0YlSsU-itWXyEFC4THzY,830
plugins/metagenomic_plasmid/tool_contracts/recycler.yaml,sha256=1IxrND7tgyittQoh298PMtpOSG7JqiYzv9aL2EQQGic,954
plugins/metagenomic_plasmid/tool_contracts/report_markdown.yaml,sha256=lEEhgDEiUe5ByKCNZz7Il_NpproIwn0rObQyRGaOq3U,704
plugins/metagenomic_plasmid/tool_contracts/rgi.yaml,sha256=Svpo8gQdMOIx0M9pdbp2ZWKkwZL3RYZo25X_eMr25is,1013
plugins/metagenomic_plasmid/tool_contracts/samtools.yaml,sha256=KlUrRJRpQeILobMfj2iHIfHkPtFpil5LwjOdO-1d0dw,706
plugins/metagenomic_plasmid/tool_contracts/samtools_fastq.yaml,sha256=INVdjE3qou2ID3XkhIx3FoctNqBT7zZcDtlpLyzNLSI,777
plugins/metagenomic_plasmid/tool_contracts/scapp.yaml,sha256=1tiQHdN8FK4VIYSqqAnHH6MAmJTylIBLEBDH81zpHE4,935
plugins/metagenomic_plasmid/tool_contracts/semibin.yaml,sha256=f5cBnnIcUVfhiSlusgIfYLa5-sJzWKxHq1Q6ekHjc6s,940
plugins/metatranscriptomics/abi-plugin.yaml,sha256=K8xv4fV1JTtTtL71014zymDQEXz1DmuZwQtRpMFy3Ig,2216
plugins/metatranscriptomics/citation_registry.yaml,sha256=4DHPoi6xhiZabdxhwKSqueDhPoFPOC-iZm5CHYwkGCA,1055
plugins/metatranscriptomics/config_default.yaml,sha256=pUzkaV3sy4ea7wiO0SA3AbUKpOS98GS-W1cmRjVzFY0,292
plugins/metatranscriptomics/figure_specs.yaml,sha256=T-qWnaeF7BjbO-lzp2PC_mawmd35KREy0oQVdb5rg4A,948
plugins/metatranscriptomics/limitations.yaml,sha256=fyj8DX94gxaz0H_prRWvylXkQtONYVzVZ1iY9HpxtXc,1555
plugins/metatranscriptomics/parsers.yaml,sha256=8x7xnDRtagP85cnUdexQwZMYpaN-CWR9M2pG79JWWCc,468
plugins/metatranscriptomics/pipeline_dag.yaml,sha256=4NbTJ3Qt_SNjQSs0WMjW1fXrEXwZo7obXtaCAiiFzVs,3469
plugins/metatranscriptomics/sample_sheet_template.tsv,sha256=V6x0S4D9Q8WVdgAsCTO8QNeLu-dsJdZkw0pkqdQ1gV0,109
plugins/metatranscriptomics/standard_tables.yaml,sha256=-sTQ7H6vxh-AoGu8zMJew5SmrA_Ix8xWr236VMTpzL0,305
plugins/metatranscriptomics/tool_registry.yaml,sha256=3w5Qv1kN7KhE-in2N46K9eLR2rwfn4F0K8X78irsosk,1620
plugins/metatranscriptomics/skills/fastp/SKILL.md,sha256=-Dz-iv9nCXM_LayYAtiMTLvk6O3h7AExI8RsnqkPibM,1133
plugins/metatranscriptomics/skills/featurecounts/SKILL.md,sha256=g2DuDQrVHtGuSnH3s0HfKVZcVdjFwzIoifV7xYIg1Sk,774
plugins/metatranscriptomics/skills/star/SKILL.md,sha256=Pg6pj-XuALU4bsoIzsvsctT8-2cTKB93g8MO1kyHRMM,906
plugins/metatranscriptomics/tool_contracts/fastp.yaml,sha256=sSzOyZiDNAD9iAUYeWV829xRHiABIZoyfCwj2etKH7U,1345
plugins/metatranscriptomics/tool_contracts/featurecounts.yaml,sha256=IjeujiY2ldEi5gJ9DQeqkaPCJ0rlGBVVl2xCFRKjFAg,1494
plugins/metatranscriptomics/tool_contracts/star.yaml,sha256=u8SQ3x0HuPigfjAIOzC9MNY4aiVxjelzttTSkGNaQAE,1107
plugins/rnaseq_expression/abi-plugin.yaml,sha256=P01M2mPzr6ndUkwUJqbLoKEIlLtT2tsRBCRMXoiZA7s,2457
plugins/rnaseq_expression/citation_registry.yaml,sha256=R2g2VD1PXFabdDY-2NSxjMwuiCcXex_Ed-irYbasx9Y,609
plugins/rnaseq_expression/config_default.yaml,sha256=rMMPoibaGVGbe4lyRMcKn6GcolIGa3ex-yrhJSq6b9U,376
plugins/rnaseq_expression/figure_specs.yaml,sha256=wAmsmTgyGWUOeV1lWR-IaoXKiNhumF7VSn8C76Pi0ss,1944
plugins/rnaseq_expression/limitations.yaml,sha256=e9RKQtMHBeX19RhOtDvF9vKcOZYSYsY3cfTTyUA4L10,1074
plugins/rnaseq_expression/parsers.yaml,sha256=T-QPkjVYw5fi208wRJh0ta1W3NV-dhZ2HpHY7U9Q4ok,673
plugins/rnaseq_expression/pipeline_dag.yaml,sha256=WP_UxzIBclNxBmKxYgDpJb0mxxQTPnKDAMBajRUNTjw,5807
plugins/rnaseq_expression/sample_sheet_template.tsv,sha256=OYKfv2D1X8W6pMil18UYbm8PciK9v0J9mJP0MZchM2U,375
plugins/rnaseq_expression/standard_tables.yaml,sha256=muV4gWbWs2jG9SB1CrYmzmH1fFQwEnOxHmVK-rWa2is,700
plugins/rnaseq_expression/tool_registry.yaml,sha256=ob7ouYkIEUuged_BhV7jjE7Sc7k3Xz0RCTYADbsonkA,2131
plugins/rnaseq_expression/scripts/build_count_matrix.py,sha256=4oZHQiC5V5fSSFodibYRidQD072hxKRPJ9uV6ilO5dE,6006
plugins/rnaseq_expression/scripts/run_deseq2.R,sha256=3kH2pZeuH59XBZ-pFOyka8uAzYwWEFw9gYUolRHWOU0,8108
plugins/rnaseq_expression/tool_contracts/build_count_matrix.yaml,sha256=Bn1Hg1vRmpvbx_I8cnKLLd23AlBG5nrGcJEUvk7fGas,1591
plugins/rnaseq_expression/tool_contracts/deseq2.yaml,sha256=OECXnldh3hLy-10bvZm-pOQCz1MuMMjDgyOmCCmglJM,1461
plugins/rnaseq_expression/tool_contracts/fastp.yaml,sha256=sSzOyZiDNAD9iAUYeWV829xRHiABIZoyfCwj2etKH7U,1345
plugins/rnaseq_expression/tool_contracts/featurecounts.yaml,sha256=IjeujiY2ldEi5gJ9DQeqkaPCJ0rlGBVVl2xCFRKjFAg,1494
plugins/rnaseq_expression/tool_contracts/star.yaml,sha256=u8SQ3x0HuPigfjAIOzC9MNY4aiVxjelzttTSkGNaQAE,1107
plugins/viral_viwrap/README.md,sha256=RzMjSUSw4CqKtqLAiYSRAo_sLa3CW9jLeUMKrTPAmlU,902
plugins/viral_viwrap/abi-plugin.yaml,sha256=K55q61EIrHVYvEFTtI9ulfjt7i95C2-zV9Y8l6uVydA,737
plugins/viral_viwrap/config_default.yaml,sha256=xSn3zE--iFndc0UzLaWVqb2pm9tsdmHxKSUGksOvg-g,535
plugins/viral_viwrap/pipeline_dag.yaml,sha256=znxowSx5CP631ZYIKl27tqOVQb-7PTMJJSnXl91ZWg8,4225
plugins/viral_viwrap/sample_sheet_template.tsv,sha256=zyDJ4mdT5hP3YdNhfRlYa_ASyjundA0Ktf0jkDeuJyQ,355
plugins/viral_viwrap/standard_tables.yaml,sha256=iQ4px4EpMZYIuyLbbic8OpOKsbJVKIc-P6NZD87OOAo,748
plugins/viral_viwrap/tool_registry.yaml,sha256=6Ou2Iq9HF8RXobRQc4yj7qKIgWSthDioYP4MVk7IRS8,816
plugins/viral_viwrap/examples/run_with_coverage.yaml,sha256=CU6AeiYtgR_FyXrVLYNqdQaVse0iCxaQoYjxzcnEXgU,237
plugins/viral_viwrap/examples/run_with_custom_mags.yaml,sha256=5ThU2YUVG3byjzjuf8LxuEVxcGwx57Rrd-sAJ_R7D54,300
plugins/viral_viwrap/examples/run_with_reads.yaml,sha256=ejvB6sTRV1RsV2TxD3YyyPW_Ib0L6wj_Yl_0RQAMKUw,242
plugins/viral_viwrap/schemas/env_report.schema.json,sha256=XIO0KsbErblt1s3yTFxZewI-YG3stnB-l5h9nO7t8_g,511
plugins/viral_viwrap/schemas/input.schema.json,sha256=3FbjefBaaO6zRVRq-QL_PHkJsMbpZwTH6oQfeWFGrMw,995
plugins/viral_viwrap/schemas/output.schema.json,sha256=Vz8cnQpWqvW1uU2j6ou8KgqHV5Whvl_Zb9-sJ8IMhts,493
plugins/viral_viwrap/tool_contracts/viwrap.yaml,sha256=ErNPckp4kQTJDzyqqKQakMp6-ORAZlwrPW682RXQtFE,1051
plugins/wgs_bacteria/abi-plugin.yaml,sha256=MTrmTu3pS9oudM-p4XusiiwCAEs8dfY6QdbdoYcc2qs,2543
plugins/wgs_bacteria/citation_registry.yaml,sha256=itDfwxcUCokP4h3nHx3Pt7fT5o7oy-YgMIf1Zu1zTiM,784
plugins/wgs_bacteria/config_default.yaml,sha256=gGx57u4oPzF5rZ_d_uZHwA6UYLY5j0prfamRI5kOD9U,311
plugins/wgs_bacteria/figure_specs.yaml,sha256=8WKkuX1WOOxjobqlq-DMXPFSBQT4nhsOkyfTiGvOsrM,1089
plugins/wgs_bacteria/limitations.yaml,sha256=vjNxwACCppU6MR6RuKCzZ5GNugn0iFPMswyxId_yi18,1120
plugins/wgs_bacteria/parsers.yaml,sha256=z7wKgNhfTeZoceg4CFmwNEuAsCMCbHpc2o9aUNv7CL8,2037
plugins/wgs_bacteria/pipeline_dag.yaml,sha256=kPfQJ-WfT5xMgFY-1T1iGlxZN3JL6S9A5tnENEHrrgc,5857
plugins/wgs_bacteria/sample_sheet_template.tsv,sha256=SctBzKZp_TYIvd7VL7gSuleaEDGMpC87cl3ymJwWOio,227
plugins/wgs_bacteria/standard_tables.yaml,sha256=8WTv3dk9YxHaXzc49jUytqsCl4fnNw6_jGwRxV5ZQB8,922
plugins/wgs_bacteria/tool_registry.yaml,sha256=A2Lph3wssWm8wDbLia5l5Qr4saTvKCkWoNdo19GBO9Y,1517
plugins/wgs_bacteria/tool_contracts/amrfinderplus.yaml,sha256=_je03wIeiaNxarKo8qezQYy-td0UFpkvcpeEz3V5z38,1235
plugins/wgs_bacteria/tool_contracts/fastp.yaml,sha256=sSzOyZiDNAD9iAUYeWV829xRHiABIZoyfCwj2etKH7U,1345
plugins/wgs_bacteria/tool_contracts/mlst.yaml,sha256=2jhTyfAWbsCMlmReHIdyNS3bSzQ-CKH6303MTDn5KBc,858
plugins/wgs_bacteria/tool_contracts/prokka.yaml,sha256=q6xHQYeHF1kTvNzwTLCJhDnvNjkvznyD_5Uszxp7u1c,1152
plugins/wgs_bacteria/tool_contracts/spades.yaml,sha256=IfzNsRQjguGj9gwRg3Aofc7OfvYD_zQV6Vl2H4WoO4A,1060
data/examples/plasmid_refseq_smoke/NC_002127.1.fasta,sha256=hz6xFLvYv5Ira0tiCHYSiniF6yUX6nY3EeEUtBUIfqk,3438
data/examples/plasmid_refseq_smoke/NC_002483.1.fasta,sha256=9TdlPvEXxT3eCCMJlRr45o6jkjQzQVqkpLlwsCcJgVI,100641
data/examples/plasmid_refseq_smoke/NC_011977.1.fasta,sha256=t7TUt9euK9i6djCDbe9ibqqlBPL9HBJ7sUCetRy2rJQ,7752
data/examples/plasmid_refseq_smoke/dataset_manifest.json,sha256=iONm1caDk8V5-f0UhDqMg7JhfLa4BliretxNtbmUm_4,1168
data/examples/plasmid_refseq_smoke/sample_sheet.tsv,sha256=wXFRvOMiVOMrueVFm7pU3i-yK7WLG_qDSXPfFO6jtRQ,935
scripts/download_databases.sh,sha256=5MptLuyGAsDKRCwXAo1P-0JIr0RsKnnK5AavgP4qKRI,6542
scripts/hifiasm_gfa_to_fasta.sh,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
scripts/normalize_hifiadapterfilt_output.sh,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
scripts/normalize_opera_ms_output.sh,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
abi_agent-1.5.3.dist-info/METADATA,sha256=iSYH1qB8NmzDivfT1TGYZ9AaM043VGTb4ZSGcmH3PeA,17266
abi_agent-1.5.3.dist-info/WHEEL,sha256=mffPy8wBnZQn2VnJUU5jE99KsxaSfiyMHV9Yt0aLVxs,87
abi_agent-1.5.3.dist-info/entry_points.txt,sha256=d0BZwmboL4UTPGBfVk2Iq4lgapeDhfhbwbm_CipgR_g,623
abi_agent-1.5.3.dist-info/RECORD,,
